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Kmunicek, J., Strelcova, Z., Kulhanek, P., Applicability of Free Energy Calculations using High‒Throughput Grid Approach. Proceedings of ISGC 2010.


Voss, A., Kmunicek, J., Matyska, L., Paganoni, M., Lin, S., The EUAsiaGrid Roadmap: Paths to a sustainable, persistent e-Infrastructure in the Asia-Pacific region. Proceedings of ISGC 2010.

Strelcova, Z., Kulhanek, P., Kmunicek, J., Koca, J., Matyska, L., Implementation and Testing of Multiple Walkers Approach Based Free Energy Calculations in the Grid Environment. Proceedings of GCCP 2009, ISBN 978-80-970145-1-3, 29-36. (2010).

Kmunicek, J., Kouril, D., Yen, E., Matyska, L., Strelcova, Z., Kulhanek, P., Koca, J., Catch-All Virtual Organizations - Solution for Heterogeneous and Disperse Grid Users Communities, Proceedings of ISGC 2009, ISBN 978-1-4419-6468-7, 299-309. (2010)

Plsek, V., Kmunicek, J., Kuba, M., A Graphical Frontend to Key Services for Utilization of Grid Environments: A CharonGUI Use Case. Proceedings of GCCP 2008, ISBN 978-80-969202-9-7, 28-35. (2009)


Schovancova, J., Chudoba, J., Dvorak, F., Filipovic, J., Kmunicek, J., Krenek, A., Matyska, L., Mulac, M., Ruda, M., Salvet, Z., Sitera, J., Sustr, Z., Travnicek, P., Experience with Large Scale Simulations on the EGEE Grid for the AUGER collaboration. Proceedings of the Third Conference of the EELA Project, ISBN 978-84-7834-565-6, 283-291. (2008)

Sustr, Z., Krenek, A., Petrek, M., Filipovic, J., Kmunicek, J., Wiesner, J., Sitera, J., Dvorak, F., Matyska, L., Multiple Ligand Trajectory Docking Study: Semiautomatic Analysis of Molecular Dynamics Simulations Using EGEE gLite Services. Proceedings of the 16th Euromicro Conference on Parallel, Distributed and Network-based Processing, ISBN 978-0-7695-3089-5, 447-454. (2008).


Kmunicek, J., Kouril, D., Kulhanek, P., Petrek, M., A Generic Grid Environment or Central Europe: A Study of Pseudorotaxanes Behavior. Proceedings of GCCP 2006, ISBN 978-80-969202-6-6, 8-15. (2007)

Krenek, A., Sitera, J., Chudoba, J., Dvorak, F., Filipovic, J., Kmunicek, J., Matyska, L., Mulac, M., Ruda, M., Sustr, Z., Campana, S., Molinari, E., Rebatto, D., Experimental evaluation of job provenance in ATLAS environment. J. Phys.: Conf. Ser. 119: 062034 doi: 10.1088/1742-6596/119/6/062034. (2008)


Kmunicek, J., Petrek, M., Kulhanek, P., Charon Extension Layer - Universal Toolkit for Grid Applications and Computational Jobs Maintenance. Proceedings of CGW06, ISBN 83-915141-7-X, 353-359. (2007)

Kmunicek, J., Kouril D., Central European Grid Infrastructure for Generic Applications, Proceedings of 2^nd Austrian Grid Symposium, ISBN 978-33-85403-221-2, 131-142. (2007)

Fiala L., Chudoba J., Kosina J., Lokajicek M., Svec J., Krasova J., Kmunicek, J., Kouril D., Matyska L., Ruda M., Salvet Z., Mulac M., Data Management for ALICE, ATLAS and VOCE in the Czech Republic. Proceedings of the 2^nd International Conference "Distributed Computing and Grid-technologies in Science and Education" (GRID'2006), ISBN 5-9530-0138-X, 55-60. (2007)

Fiala L., Chudoba J., Kosina J., Krasova, J., Lokajicek M., Svec J., Kmunicek, J., Kouril D., Matyska L., Ruda M., Salvet Z., Particle Physics Grid Deployment in the Czech Republic, in NEC'2005, Nuclear Elecronics & Computing, Proceedings of the XX International Symposium. ISBN 5-9530-0108-8, vol. 16, no. 3: 104–110. (2006)

Kouril, D., Kmunicek, J., Easily and Quickly to the Grid - VOCE Environment, ICS MU Bulletin, ISSN 1212-0901, vol. 16, no. 3: 6–9 (2006)


Chudoba, J., Fiala, L., Kmunicek, J., Kosina, J., Kouril, D., Lokajicek, M., Matyska, L., Ruda, M., Svec, J., VOCE - A Grid Environment for Central Europe. Proceedings of CGW05, ISBN 83-915141-5-3, 322-328. (2006)

Kmunicek, J., Kulhanek, P., Petrek, M., CHARON System - Framework for Applications and Jobs Management in Grid Environment. Proceedings of CGW05, ISBN 83-915141-5-3, 332-340. (2006)

Kmunicek, J., Grids as Key Phenomenon of Information Technology of New Millennium, ICS MU Bulletin, ISSN 1212-0901, vol. 16, no. 2: 1–5 (2005)


Matyska, L., Kmunicek, J., Road to Petabytes: Czech Republic Participates in European Grid Building, ComputerWorld, 40, XV: 26–27 (2004)


Kmunicek, J., Jedlicka, T., Gago, F., Wade, R. C., Damborsky, J., Comparative Binding Energy Analysis of the Substrate Specificity of Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26. Biochemistry, 44: 3390–3401 (2005)


Dobes, P., Kmunicek, J., Mikes, V., Damborsky, J., Binding of Fatty Acids to ß-Cryptogein: Quantitative Structure-Activity Relationships and Design of Selective Protein Mutants. Journal of Chemical Information and Modeling, 44: 2126–2132 (2004)
Damborsky, J., Kmunicek, J., Jedlicka, T., Luengo, S., Gago, F., Ortiz, A. R., Wade, R. C., Rational Re-design of Haloalkane Dehalogenases Guided by Comparative Binding Energy Analysis. In. Svendsen, A. (Ed.), Enzyme Functionality: Design, Engineering and Screening, Marcel Dekker, New York, 79–96 (2003)
Kmunicek, J., Bohac, M., Luengo, S., Gago, F., Wade R. C., Damborsky J., Comparative Binding Energy Analysis of Haloalkane Dehalogenase Substrates: Modelling of Enzyme-Substrate Complexes by Molecular Docking and Quantum Mechanic Calculations. Journal of Computer-Aided Molecular Design, 17: 299–311 (2003)
Oakley A. J., Prokop Z., Bohac M., Kmunicek J., Jedlicka, T., Monincova M., Kuta-Smatanova I., Nagata Y., Damborsky J., Wilce M. C. J., Exploring the Structure and Activity of Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26: Evidence for Product and Water Mediated Inhibition. Biochemistry 41: 4847–4855 (2002)
Kmunicek, J., Luengo, S., Gago, F., Ortiz, A. R., Wade, R. C., Damborsky, J., Comparative Binding Energy (COMBINE) Analysis of the Substrate Specificity of Haloalkane Dehalogenase from Xanthobacter autotrophicus GJ10. Biochemistry 40: 8905–8917 (2001)
My Ph.D. thesis was created during my four years stay in National Centre for Biomolecular Research where I got an opportunity to become a member of Protein Engineering Group.
Numerous lectures, talks and posters presentations have been presented at conferences, congresses, workshops, seminars, courses, internal meetings and sessions during various occasions at different locations of my working travels.

(c) Copyright 1975-2010 JK ;-)